Publications
听
Gibbs, J. H.; Bagchi, B.; Mohanty, U. 鈥淏imodality and Cluster-Size Distribution in a Finite Lennard-Jones System.鈥澨�Phys. Rev. B 24, 2893-2902 (1981).
Berkcan, E.; Cooper, L. N.; Mohanty, U. 鈥淭he Bethe Ansatz, Periodic Boundary Conditions and Relations Between Various Models.鈥澨�Phys. Lett.听A听81, 172-174(1981).
Mohanty, U.; Bagchi, B.; Gibbs, J. H. 鈥淏imodality and Long-Range Order in Ideal Bose Systems.鈥澨�J. Stat. Phys. 28, 685-710 (1981).
Shuler, K. E.; Mohanty, U. 鈥淩andom Walk Properties from Bond Enumeration: Anisotropic Diffusion in Lattices with Periodic and Randomly Distributed Traps.鈥澨�Proc. Nat. Acad. Sci. (USA) 78, 6576-6578 (1981).
Mohanty, U. 鈥淧roperties of Mayer Cluster Expansion.鈥澨�J. Math. Phys. 23, 1489-1492 (1982).
Bagchi, B.; Mohanty, U. 鈥淪patial Bose-Einstein Condensation: Universality in Cluster Size Distributions.鈥澨�Phys. Lett.听A听91, 4515-4518 (1982).
Mohanty, U.; Shuler, K. E.; Oppenheim, I. 鈥淥n the Exact and Phenomenological Langevin Equations for a Harmonic Oscillator in a Fluid.鈥澨�Physica听A听115, 1-20 (1982).
Lindenberg, K.; Mohanty, U.; Seshadri, V. 鈥淗amiltonian Model for the Brownian Motion of a Rigid Rotor.鈥澨�Physica听A听119, 1-16 (1983).
Mohanty, U.; Rice, S. A. 鈥淎 Generalization of the Ewald-Oseen Extinction Theorem: Relation to Surface Polariton Modes.鈥澨�J. Chem. Phys. 78, 7386-7389 (1983).
Mohanty, U.; Rice, S. A. 鈥淴-ray Total External Reflectance-Diffraction as a Probe of the Structure of the Liquid Vapor Interface.鈥澨�J. Chem. Phys. 79, 2482-2486 (1983).
Mohanty, U.; Rice, S. A. 鈥淭heory of Electronic Conduction in the Liquid Vapor Interface of a Simple Metal.鈥�听J. Chem. Phys. 79, 5652-5657 (1983).
Bagchi, B.; Cerjan, C.; Mohanty, U.; Rice, S. A. 鈥淐rystallization of the Classical One- Component Plasma.鈥澨�Phys. Rev.听B听29, 2857-2860 (1984).
Jones, G. L.; Mohanty, U. 鈥淎 Density Functional Variational Treatment of the Hard-Sphere Transition.鈥澨�Mol. Phys. 54, 1241-1252 (1985).
Lipkin, M.; Rice, S. A.; Mohanty, U. 鈥淭he Elastic Constants of Condensed Matter: A Direct Correlation Function Approach.鈥澨�J. Chem. Phys. 82, 472-479 (1985).
Mohanty, U. 鈥淚nferences from a Microscopic Model for the Stokes-Einstein Relation.鈥澨�Phys. Rev. 32, 3055-3058 (1985).
Phillips, P.; Mohanty, U. 鈥淭he Correlation Length Divergence of Tolman鈥檚 Length.鈥澨�J. Chem. Phys. 83, 6392-6395 (1985).
Bawendi, M.; Freed, K. F.; Mohanty, U. 鈥淎 Lattice Model for Interacting, Self-Avoiding Polymers with Controlled Length Distribution.鈥澨�J. Chem. Phys. 84,7036-7046(1986).
Rice, S. A.; Gryko, J.; Mohanty, U. 鈥淪tructure and Properties of the Liquid-Vapor Interface of a Simple Metal.鈥� in Progress in Liquid Physics, Ed. Croxton, C. (Wiley,听1986).
Thacker, T. S.; Mou, C. Y.; Mohanty, U.; Lin, J. 鈥淭he Limiting Concentration Dependence of the Heat of Transport in Electrolyte Solution.鈥澨�J. Chem. Phys. 84, 6401-6409 (1986).
Mohanty, U. 鈥淟ow Temperature Relaxation in Glassy Systems.鈥澨�Phys. Rev.听A听34, 4993-4999 (1986).
Mohanty, U.; Jones, G. 鈥淒ensity Wave Theory of Liquid-Solid Interface.鈥澨�Ann. N.Y. Acad. 484, 316-317 (1986).
Jaric, M.; Mohanty, U. 鈥淢artensitic Instability of an Icosahedral Quasicrystal.鈥� Phys. Rev. Lett.听58, 230-233 (1987).
Jaric, M.; Mohanty, U. 鈥淓lastic Constants of Hard-Sphere Crystal.鈥澨�Phys. Rev. Lett. 59, 1170 (1987).
Bawendi, M.; Freed, K.; Mohanty, U. 鈥淎 Lattice Field Theory for Polymer Systems With Nearest-Neighbor Interaction Energies.鈥澨�J. Chem. Phys. 87, 5534-5540 (1987).
Jaric, M.; Mohanty, U. 鈥淒ensity Functional Theory of Elastic Moduli: Hard Sphere and Lennard-Jones Crystals.鈥澨�Phys. Rev.听B听37, 4441-4457 (1988).
Mohanty, U.; Singh, U. P.; Jones, G. 鈥淒ensity Functional Theory of Freezing and Solids.鈥澨�Physics Today听41, S17-S18 (1988).
Mohanty, U. 鈥淐onfigurational Entropy Dependence of Cooperative Relaxation Properties in Glass Forming Liquids.鈥澨�J. Chem. Phys. 86, 3778-3782 (1988).
Mohanty, U. 鈥淨uantum Mechanical Rate Constants in the Presence of Linear Dissipative Mechanism.鈥澨�J. Chem. Phys. 88, 3057-3060 (1988).
Singh, U. P.; Mohanty, U.; Singh, Y. 鈥淢olecular Theory of Freezing Transition of Hard Ellipsoids and Hard Dumbbell Molecules.鈥澨�Phys. Rev.听A听38, 4377-4380 (1988).
Jaric, M.; Mohanty, U. 鈥淒ensity Functional Theory of Elastic Constants of Quasi-Crystals.鈥澨�Phys. Rev.听B听38, 9434 (1988).
Bhattacharya, I.; Singh, U. P.; Mohanty, U. 鈥淥n the Structure Factor of a Hard-Sphere Solid.鈥澨�J. Chem. Phys.听90, 5880-5881 (1989).
Singh, U. P.; Mohanty, U.; Singh, Y. 鈥淒ensity Functional Theory of Freezing of Molecular Liquids.鈥澨�Physica听A听158, 817-841 (1989).
Singh, U. P.; Mohanty, U.; Sinha, S. 鈥淧erturbation Theory of Fluids of Axisymmetric Molecules: Gaussian Overlap and Modified Overlap Fluid Model.鈥澨�Mol. Phys. 68, 1047-1066 (1989).
Koutselos, A.; Mohanty, U. 鈥淢odel Molecular Hamiltonians: A Renormalization Group Approach to Atoms and Molecules.鈥澨�Physica听A听166, 99-114 (1990).
Mohanty, U. 鈥淐ooperative Relaxation in Glass Forming Liquids.鈥澨�Physica听A 162, 362-376 (1990).
Mohanty, U. 鈥淥n the Temperature Dependence of Cooperative Relaxation in Glass Forming Liquids.鈥澨�J. Chem. Phys. 93, 8399 (1990).
Mohanty, U. 鈥淥n the Nature of Supercooled and Glassy States of Matter.鈥澨�Physica听A听177, 345-355 (1991).
Bhattacharya, I.; Mohanty, U.; Singh, U. P. 鈥� A Molecular Theory of Melting.鈥澨�Physica听A听175, 473-484 (1991).
Bhattacharya, I.; Mohanty, U. 鈥淪tatistical Mechanics of Line-Liquids.鈥澨�J. Chem. Phys. 99, 6461-6464 (1993).
Montero, M. R.; Mohanty, U.; Brey, B. 鈥淭opological Characteristics of Supercooled Polymeric Liquids.鈥澨�J. Chem. Phys. 99, 9979-9983 (1993).
Mohanty, U. 鈥淪upercooled Liquids.鈥� Advances in Chemical Physics, Vol. 89, Chapter 2, pages 89-158, ed. Prigogine, I.; Rice, S. A. (John Wiley & Sons, Inc.,听1994).
Mohanty, U. 鈥淚nhomogeneity and Relaxation in Supercooled Liquids.鈥澨�J. Chem. Phys. 100, 5905-5909 (1994).
Mohanty, U.; Oppenheim, I.; Taubes, C. H. 鈥淟ow Temperature Relaxation and Entropic Barriers in Supercooled Liquids.鈥澨�Science听266, 425-427 (1994).
Bleil, R.; Mohanty, U. 鈥淪tatistical Mechanics of Membranes: Charge Effects on the Stability of Globular Proteins.鈥澨�J. Phys. Chem. 99, 2915 (1995).
Mohanty, U.; Zhao, Y. 鈥淧olarization of Counterions in Polyelectrolytes.鈥澨�Biopolymers听38, 377-388 (1996).
Mohanty, U.; Ninham, B.W.; Oppenheim, I. 鈥淒ressed Polyions, Counterion Condensation and Adsorption Excess in Polyelectrolytes.鈥澨�Proc. Nat. Acad. Sci.听(USA)听93, 4342-4344 (1996).
Mohanty, U. 鈥淓ntropic Approach to Relaxation Behavior in Glass-Forming Liquids.鈥� in听Supercooled Liquids: Advances and Novel Applications, p. 95-109, Ed. Fourkas, J. T.;听et. al.听(ACS Symposium Series 676,听1997).
Manning, G. S.; Mohanty, U. 鈥淐ounterion Condensation on Ionic Oligomers.鈥澨�Physica A听247, 196-204 (1997).
Fourkas, J. T.; Mohanty, U.; Kivelson, D.; Nelson, K. 鈥淎 Brief Introduction to Supercooled Liquids.鈥澨�Supercooled Liquids: Advances and Novel Applications, p. 2-12. Ed. Fourkas, J. T.;听et al.(ACS Symposium Series 676,听1997).
Deschenes, L. A.; Zilaro, P.; Muller, L. J.; Fourkas, J. T.; Mohanty, U. 鈥淨uantitative Measure of Hydrophobicity: Experiment and Theory.鈥澨�J. Phys. Chem.听B听101, 5777-5779 (1997).
Supercooled Liquids: Advances and Novel Applications, Ed. Fourkas, J. T.;听et al. (ACS Symposium Series 676,听1997).
Mohanty, U. 鈥淧olarization of Counterions in a Strongly Coupled Coulombic System: DNA.鈥� in Proceedings of Strongly Coupled Coulomb Systems, Ed. Kalman, G.听et al. (Plenum. Press,听1998).
Deschenes, L. A.; Barrett, J.; Muller, L. J.; Fourkas, J. T.; Mohanty, U. 鈥淚nhibition of Bubble Coalescence in Aqueous Solutions. I. Electrolytes.鈥澨�J. Phys. Chem. B听102, 5115-5119 (1998).
Mohanty, U.; Stellwagen, N. 鈥淔ree Solution Mobility of Oligomeric DNA.鈥澨�Biopolymers听49, 209-214 (1998).
Mohanty, U.; Searls, T.; McLaughlin, L. W. 鈥淎nomalous Migration of Short Sequences of Nucleic Acids in Polyacrylamide Gels: Prediction and Experiment.鈥澨�J. Am. Chem. Soc. 120, 8275-8276 (1998).
Diezemann, G.; Mohanty, U.; Oppenheim, I. 鈥淪low Secondary Relaxation in a Free-Energy Landscape Model for Relaxation in Glass-Forming Liquids.鈥澨�Phys. Rev.听E听59, 2067-2083 (1999).
Loughnane, B. J.; Scodinu, A.; Farrer, R. A.; Fourkas, J. T.; Mohanty, U. 鈥淓xponential Intermolecular Dynamics in Optical Kerr Effect Spectroscopy of Small-Molecule Liquids.鈥澨�J. Chem. Phys. 111, 2686 (1999).
Mohanty, U.; Searls, T.; McLaughlin, L. W. 鈥淢igration Effects for Small Phosphate Labeled Single Stranded DNA Fragments in Gels: Prediction and Experiment.鈥澨�J. Am. Chem. Soc. 122, 1225-1226 (2000).
Mohanty, U.;Diezemann, G.; Oppenheim, I. 鈥淥n the Nature of Slow Beta Relaxation in Supercooled Liquids.鈥� J. Phys. A. Cond. Matt. 12, 6431-6435 (2000).
Mohanty, U.;Diezemann, G.; Fourkas, J. 鈥淥n the Relationships Among Special Temperatures for Supercooled Liquids: A Configurational Space Analysis.鈥澨�J. Chem. Phys. 113, 3719-3722 (2000).
Mohanty, U.; Searls, T.; McLaughlin, L. W. 鈥淎nomalous Migration of Short Sequences of DNA: Comparison of Theory and Experiment.鈥澨�J. Biomol Struct. Dyn. Conversation听11, Issue#2, 371-375 (2000).
Mohanty, U.; McLaughlin, L. W. 鈥淎nomalous Migration of DNA in Gels, and the Polyelectrolyte Nature of DNA.鈥� Ed. Radeva, Ts. (Marcek Dekker,听2001).
Mohanty, U.; Craig, N.; Fourkas, J. T. 鈥淥n a Relationship Between Dynamical and Equilibrium Characteristics of Glass-Forming Liquids.鈥澨�Phys. Rev. E听64, 10501-10502 (2001).
Mohanty, U.; Craig, N.; Fourkas, J. T. 鈥淩elationship Between Kinetics and Thermodynamics of Supercooled liquids.鈥�听J. Chem. Phys. 114, 10577-10578 (2001).
Teeter, M. M.; Yamano, A.; Stec, B.; Mohanty, U. 鈥淥n the Nature of Glassy State of Matter in a Hydrated Protein: Relation to Protein Function.鈥澨�Proc. Nat. Acad. (USA )听98, 11242-11247 (2001).
Mohanty, U. 鈥淥n a Connection Between Replica Symmetry Breaking Parameter and Narayanaswamy-Gardon Non-Linear Parameter.鈥� in Liquid Dynamics: Experiment, Simulation, and Theory. p. 249-255, Ed. Fourkas, J. T. (ACS Symposium Series听820,听2002).
Mohanty. U.; McLaughlin, L. W. 鈥淥n the Characteristics of Migration of Oligomeric DNA in Polyacrylamide Gels and in Free Solution.鈥澨�Ann. Rev. Phys. Chem. 52, 93-106 (2002).Tanaka, H.; Mohanty, U.听鈥�On the Debye-Waller Factor of Hexagonal Ice: A Computer Simulation Study鈥澨�J. Am. Chem. Soc. 124, 8085-8089 (2002).
Spasic. A.; Yang, K.; Mohanty, U. 鈥淭owards a Model for the Mobility of Circularly Permuted DNA Fragments in Gel.鈥� Ed. Somasundaran, S.; Markovic, M.听ACS Symposium Series听878 (2004).
Mohanty, U.; Taubes, C. H. 鈥淒ynamics of Bent DNA Molecules in Polyacrylamide Gels.鈥澨�J. Phys. Chem.听B听107, 6187 (2003).
Gerardin, J.; Mohanty, S.; Mohanty, U. 鈥淒ynamics of Supercooled Liquids: Universality of Relaxation Time at Cross-Over Temperature鈥澨�J. Chem. Phys. 119, 4473 (2003).
Haran,T. E.; Cohen, I.; Spasic, A.; Yang, K.; Mohanty, U. 鈥淒ynamics of Curved DNA Molecules: Prediction and Experiment.鈥澨�J. Am. Chem. Soc. 125, 11160 (2003).
Spasic, A.; Hess, G.; Becker, K. A.; Hansen, M.; Bleil, R.; Mohanty, U. 鈥淎symmetric Charge Neutralization of DNA.鈥� Ed. Stellwagen, N. C. and Mohanty, U.听ACS Symposium Series听884, 133-143 (2004).
Haran,T. E.; Cohen, I.; Spasic, A.; Yang, K.; Mohanty, U. 鈥淐haracteristics of Migration Patterns of DNA Oligomers in Gels and its Relationship to the Question of Intrinsic DNA Bending.鈥澨�J. Am. Chem. Soc. 126, 2372-2377 (2004).
Stellwagen, N. C. Mohanty, U. 鈥淐urvature and Deformation of Nucleic Acids: Overview.鈥� ACS Symposium Series 884, 1-11 (2004).
Mohanty, U.; 鈥淔ragility Metrics in Glass-Forming Liquids.鈥澨�Adv. Chem.Phys. 129, 73-105 (2004).
Mohanty, U.; Spasic, A.; Kim, H. D.; Chu, S. 鈥淚on Atmosphere of Three-Way Junction Nucleic Acid.鈥澨�J. Phys. Chem. B. 109, 21267-21272 (2005).
Schultes, E.; Spasic, A.; Mohanty, U.; Bartel, D. 鈥淐ollapse of Randomly Generated RNA Sequences.鈥澨�Nature听and Structural Biology听12, 1130-1136 (2005).
Taubes, C. H.; Mohanty, U.; Chu, S. 鈥淚on Atmosphere Around Nucleic Acid.鈥澨�J. Phys. Chem. B.听109, 21267-21272 (2005).
Casalini, R.; Mohanty, U.; Roland, C. M. 鈥淭hermodynamic Interpretation of the Scaling Dynamics of Supercooled Liquids.鈥澨�J. Chem. Phys. 125, 014505-014513 (2006).
Mohanty, U.; Spasic, A. 鈥淐ounterion Condensation in Nucleic acid.鈥澨�Adv. Chem. Phys. Volume 139, 139-176 (2008).
Spasic, A.; Sanyasi, S.; Mohanty, U.; Chu, S. 鈥淧olyelectrolyte Behavior and Kinetics of aa-tRNA on the Ribosome.鈥澨�J. Phys. Chem. B听125, 014505-014513 (2008).
Mohanty, U. 鈥淔luctuation Corrections to Cooperative Relaxation in Deeply Supercooled Liquids.鈥澨�Rheology听1-3 (2008).
Guo, Z.; Taubes, C. H.; Maher, J; Mohanty, U. 鈥淒NA on a Tube: Electrostatic Contribution to DNA Stiffness.鈥澨�J. Phys. Chem.B 112, 16163-16169 (2008).
Haran, T.; Mohanty, U. 鈥淭he Unique Structure of A-tracts and Intrinsic DNA Bending.鈥� Q. Rev. Biophys. 42, 41-81 (2009).
Roberts, M.; Mohanty, U.; Redfield, A. 鈥淧hospholipids Reorientation at the Lipid/Water Interface Measured by High Resolution听31P NMR Field Cycling Spectroscopy.鈥澨�Biophys. J. 97, 132-141 (2009).
Guo, Z.; Mohanty, U.; Nohere, J.; Sawyer, T.; Sherman, W.; Krilov, G. 鈥淧robing the alpha-helical stability of p53 peptides: molecular dynamics simulations and analysis.鈥� Chem. Biol. Drug. Design. 75, 348-359 (2010).
Guo, Z.; Gibson, M.; Sanyasi, S.; Chu, S.; Mohanty, U. 鈥淩ole of large thermal fluctuations and magnesium ions in t-RNA selectivity of the ribosome.鈥澨�Proc. Nat. Acad. USA. 108, 3947-51 (2011).
Hayes, R. L.; Noel, J. K.; Mohanty, U.; Whitford, P.; Hennelly, S.; Onuchic, J. N.; Sanbonmatsu, K. 鈥淢agnesium Fluctuations Modulate RNA Dynamics in SAM-I Riboswitch.鈥澨�J. Am. Chem. Soc. 134, 12043-12053 (2012).
Guo, Z.; Streu, K.; Krilov, G.; Mohanty, U. 鈥淧robing the Origin of Single and Double Stapled p53 Analogs Bound to MDM2.鈥澨�Chem. Biol. Drug. Design听83, 631-642(2014).
Hayes, R. L.; Noel, J. K.; Whitford, P.C.; Mohanty, U.; Sanbonmatsu, K.; Onuchic, J. N. 鈥� Reduced Model Captures Mg2+-RNA Interaction Free Energy of Riboswitches.鈥澨�Biophysical听J.听106, 1508-1519 (2014).
Hayes, R. L.; Noel, J. K.; Mandic, A.; Whitford, P.C.; Sanbonmatsu, K.; Mohanty, U.; Onuchic, J. N. 鈥淕eneralized Manning Condensation Model Captures the RNA Ion Atmosphere.鈥澨�Phys. Rev. Lett. 114, 258105-1 258105-6 (2015).
Levi, M; Bandarkar, P.; Yang, J. H. ; Wang, A.; Mohanty, U.; Noel, J. K.; Whitford, P. C. . In Methods in Molecular Biology, edited by Bonomi, C.; Bonomi, M. Springer series听(2018); 鈥淯sing SMOG2 to Simulate Complex Biomolecular Assemblies.鈥�, pp 1-18.听 bioRxiv 371617.
Lammert, H.; Wang, A.; Mohanty, U.; Onuchic, J. 鈥淩NA as a Complex Polymer with Coupled Dynamics of Ions and Water in the Outer Solvation Sphere.鈥澨�J. Phys. Chem. B听122, 11218-11227 (2018).
Hutchison, C.; Bhattarai, A.; Wang, A.; Mohanty, U. 鈥淔luctuation Effects in the Adam-Gibbs Model of Cooperative Relaxation.鈥澨�J. Phys. Chem. B听123, 8086-8090 (2019).
Luo, J.; Li, Y.; Zhang, H.; Wang, A. Lo, W. S.; Dong, Q.; Wong, N.; Povinelli, C.; Shao, Y. Chereddy, S.; Wunder, S.; Mohanty, U.; Tsung, C. K.; Wang, D. 鈥淎 Metal-Organic Framework Thin Film for Selective Mg2+听Transport. 鈥溙�Angew. Chem. Int. Ed., 58, 15313-15317 (2019).
Levi, M.; Walak, K.; Wang, A,; Mohanty, U.; Whitford, P. C. 鈥淎 Steric Gate Controls P/E Hybrid-State Formation of tRNA on the Ribosome.鈥澨�Nature Communications听11: 5706, 1-12 (2020).
Wang, Y.; Luo, T.; Li, Y.; Wang, A.; Wang, D.; Bao, J. .; Mohanty, U.; Tsung, C. K. 鈥淢olecular-Level Insights into Selective Transport of Mg2+ in Metal-Organic Frameworks,鈥澨�ACS Applied Materials & Interfaces听(in press, August听2021)
Wang, A.; Levi, M.; Mohanty, U.; Whitford, P. 鈥淗ow Diffuse Ions Regulate Conformation Dynamics of Ribonuceoprotein Assemblies.鈥澨�JACS听(submitted,听2021)
De Oliveria, A. B.; Contessoto, V, G,; Hassan, A.; Byju.; S.; Wang, A.; Wang, Y.; Rojas, E. 听听听听听听听听听听听 D.; Mohanty, U,; Noel, J. K.; Onuchic, J. N.; Whitford, P. C. SMOG 2 and OpenSMOG: 鈥溙� Extending the Limits of Structure-Based Models.鈥澨�Proteins Science听(submitted,听2021)
BOOKS
Supercooled Liquids: Advances and Novel Applications, Ed. Fourkas, J. T.; Kivelson, D.; Mohanty, U.; Nelson, K. A.,American Chemical Society Symposium Series 676, 1-352 (1997).
Sequence Dependence Curvature and Deformation in Nucleic Acid and Protein Nucleic Acid Complexes, Ed. Stellwagen, N. C.; Mohanty, U., American Chemical Society Symposium Series 884, 1-251 (2004).
Chemical Thermodynamics, I. Oppenheim, K. Lindenberg, U. Mohanty (Garland Publishing, unpublished,听2003).